Bioinformatics Matlab

April 26, 2014 – 10:27 am

Bioinformatics Software

Bioinformatics Toolbox™ provides algorithms and apps for Next Generation Sequencing (NGS), microarray analysis, mass spectrometry, and gene ontology. Using toolbox functions, you can read genomic and proteomic data from standard file formats such as SAM, FASTA, CEL, and CDF, as well as from online databases such as the NCBI Gene Expression Omnibus and GenBank®. You can explore and visualize this data with sequence browsers, spatial heatmaps, and clustergrams. The toolbox also provides statistical techniques for detecting peaks, imputing values for missing data, and selecting features.

You can combine toolbox functions to support common bioinformatics workflows. You can use ChIP-Seq data to identify transcription factors; analyze RNA-Seq data to identify differentially expressed genes; identify copy number variants and SNPs in microarray data; and classify protein profiles using mass spectrometry data.

Source: www.mathworks.com

Lecture 13 | Machine Learning (Stanford)

Lecture 16 | Machine Learning (Stanford)

Lecture 5 Machine Learning Stanford

Rest of my resume

by _thanks

ACCOMPLISHMENTS
Bioinformatics programmer:
* Created automated program to accurately model protein structure of small bacterial genomes by obtaining quality alignments of sequences using Perl; Developed a scientific proposal and formally presented at a conference
* Created and designed a website with CGI linked to the database using Perl DBI; Designed the database schema and entity-relationship diagrams; Created database in MySQL and integrated other databases
Designed and created circuitry in PSpice:
* Assembled and inspected components according to design
* Programmed and assessed design
Invented, developed, and researched idea for a start-up company developing a novel cooling device for the CPU including:
* Gantt chart for project planning and scheduling; Forecasting budget, capital management, project risk management, financing
* Analysis, planning, and implementation of marke…

MATLAB® in quality assurance sciences
Book (Woodhead Publishing)

Ligonier Borough complies with directional sign mandate — Tribune-Review
Although Geographic Information Systems mapping of the borough pinpoints all directional signs, it does not include all data needed to comply with the program. “They want to see off-sets, heights, directions, locations, all kinds of stuff,” Faas said.

Mathematical Biology: An Introduction with Maple and Matlab (Undergraduate Texts in Mathematics)
Book (Springer)

	Matlab® in Bioscience and Biotechnology (Woodhead Publishing Series in Biomedicine) eBooks (Woodhead Publishing)
	Numerical Methods for the Life Scientist: Binding and Enzyme Kinetics Calculated with GNU Octave and MATLAB Book (Springer)
	Environmental Modeling: Using MATLAB® Book (Springer)

Popular Q&A

Is it worth it to get a Masters in Bioinformatics?

It depends. First of all, bioinformatics is a really hot topic right now and from that point of view: Yes. Especially in you are a biology graduate.
On the other hand, what you will do in Bioinformatics will involve mostly Statistics and Data Mining, so if you are a Math/CS graduate you can study something like that that will broaden your perspective and at the same time allow you to do bioinformatics.